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Genomes

Paramecium Genomes

Genomes come from ParameciumDB : https://paramecium.i2bc.paris-saclay.fr
SPECIES STRAIN MAC_GENOME ANNOTATION
Paramecium biaureliaV1-4biaurelia_V1-4_assembly_v1pbiaurelia_V1-4_annotation_v2.0
Paramecium bursaria110224pbursaria_mac_110224_v1.0pbursaria_110224_annotation_v2.0
Paramecium caudatum43c3d caudatum_43c3d_assembly_v1 pcaudatum_43c3d_annotation_v2.0
Paramecium decaurelia 223 pdecaurelia_mac_223_v1.0 pdecaurelia_223_annotation_v1.0
Paramecium dodecaurelia 274 pdodecaurelia_mac_274_v1.0 pdodecaurelia_274_annotation_v1.0
Paramecium goertzi FT8 pgoertzi_mac_FT8_v1.0 pgoertzi_FT8_annotation_v1.0
Paramecium jenningsiM pjenningsi_mac_M_v1.0 pjenningsi_M_annotation_v1.0
Paramecium multimicronucleatum MO3c4 multimicronucleatum_MO3c4_assembly_v1 multimicronucleatum_MO3c4_annotation_v1
Paramecium novaurelia TE pnovaurelia_mac_TE_v1.0 pnovaurelia_TE_annotation_v1.0
Paramecium octaurelia K8_CA1 poctaurelia_K8_CA1/v1poctaurelia_K8_annotation_v1.0
Paramecium octaurelia 138 poctaurelia_mac_138_v1.1.MAC-constitutive poctaurelia_138_annotation_v1.0.MAC-cons_v1_1
Paramecium pentaurelia 87 ppentaurelia_mac_87_v1.0.MAC-constitutive ppentaurelia_87_annotation_v1.0.MAC-cons_v1_0
Paramecium polycaryum Hb20-6 ppolycaryum_mac_Hb20-6_v1.0.MAC-constitutive ppolycaryum_Hb20-6_annotation_v1.0.MAC-cons_v1_0
Paramecium primaurelia AZ9-3 pprimaurelia_mac_AZ9-3_v1.1.MAC-constitutive pprimaurelia_AZ9-3_annotation_v1.0.MAC-cons_v1_1
Paramecium primaurelia Ir4-2 primaurelia_Ir4-2_assembly_v1 primaurelia_Ir4-2_annotation_v1
Paramecium quadecaurelia NiA pquadecaurelia_mac_NiA_v1.0 pquadecaurelia_NiA_annotation_v1.0
Paramecium sexaurelia AZ8-4 sexaurelia_AZ8-4_assembly_v1 psexaurelia_AZ8-4_annotation_v2.0
Paramecium sonneborni ATCC_30995 psonneborni_mac_ATCC_30995_v1.0.MAC-constitutive psonneborni_ATCC_30995_annotation_v1.0.MAC-cons_v1_0
Paramecium tetraurelia 51 ptetraurelia_mac_51_v2.0.MAC-constitutive ptetraurelia_51_annotation_v2.0.MAC-cons_v2_0
Paramecium tetraurelia 32 ptetraurelia_mac_32_v2.0.MAC-constitutive ptetraurelia_32_annotation_v1.0.MAC-cons_v2_0
Paramecium tetraurelia d4-2 ptetraurelia_mac ptetraurelia_mac_annotation_v1
Paramecium tredecaurelia 209_AP38 ptredecaurelia_209_AP38_filtered ptredecaurelia_209_annotation_v1.1
Tetrahymena Genomes

Genomes come from http://ciliate.org/index.php/home/welcome
Tetrahymena borealis T_borealis_oct2012_proteins.fasta
Tetrahymena elliotti T_elliotti_oct2012_proteins.fasta
Tetrahymena malaccensis T_malaccensis_oct2012_proteins.fasta
Tetrahymena thermophila T_thermophila_June2014_proteins.fasta

Gene Families Distribution

Number of genes Number of families
at least 2 39,779
at least 10 16,347
at least 100 562
at least 500 13
Number of species Number of families
at least 2 37,571
at least 10 15,841
at least 19 12,023
26 1,185